PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS05185 (340 amino acids)

SeqID: HSERO_RS05185 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 18266861: Inner membrane ABC transporter permease protein yjfF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS05185
MMLVSSLRRASHAPWFTSMVTVVLLVVMLVAGALGYDGFLSPQVMLNLLIDNAFLLVVAI
GMTFVILSGGIDLSVGSVLALTTMVAAFLLQNWHWHPLLVIVTVLLMGAGFGAAMGAMIH
YFKLQAFIVTLAGMFLARGLCYLISINSITIDDPLFTTLSQTRLELAGLFISPSVVIALF
MLALAIWMAHCTRFGRAVYAIGGNENSALLMGLPVGRTKVLVYAFSGLCAAVAGVLFSFY
MLSGYGLHAQGVELDAIAAVVIGGTLLTGGYGYVAGTLTGVLILGVIQTLIAFDGTLSSW
WTKIFIGALLFVFCVAQRVISLGALRGKPAGSAKAAPAGA