PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS05840 (433 amino acids)

SeqID: HSERO_RS05840 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600502: probable oxidoreductase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.76
    Periplasmic            0.24
    OuterMembrane          0.00
    Extracellular          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.76

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS05840
MTKHSNPAFPPSLWAATAGEFSGAPPLQASARYDVAIVGAGYTGLSTALHLAQAGVSVCV
LDAHAPGWGASGRNGGQVIPGLKYDPDQLRVMFGSAVADPLIAAIGSAADTVFDLIARHG
IECEAQRAGWIQPTHSPKMMRALEARARQWMAEGAPAQLMDGAEVTRRIGTGAYVGGWKD
ERAGSLHPLKYCRGLAQAAQRLGVVIHGDTRVTRLERRQGGWRLHGPSGEQGPHIDAERV
VLATNGYTDDLWPHLRQSVIAANSFIVATRPLPPALGASILPGGEVTSDSRRLLLYYRRD
AQGRLLMGGRGPFGEPQGPADFAHLERSVALLFPQLAGVEYEYRWSGRVAITRDFLPHVH
EPAPGLSIALGYNGRGIAMATMMGQRLAQRLIGPAGTAFPFPVSTIAPIPLHGLQRFYIA
AGVAWYSVLDRFS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory