PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS08850 (772 amino acids)

SeqID: HSERO_RS08850 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 62297831: NADH-quinone oxidoreductase subunit 3 (NADH dehydrogenase I chain 3)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    6.29
    Cytoplasmic            3.70
    Periplasmic            0.01
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS08850
MVEIEIDGKKVEVQEGSMVMDAANKLGTYIPHFCYHKKLSIAANCRMCLVEVEKAPKPLP
ACATPVNAGMIVRTASDKAVKAQKGVMEFLLINHPLDCPICDQGGECQLQDLAVGYGGSS
SRYQEEKRVVEPKDVGPLISMKEMNRCIHCTRCVRFGQEVAGVMELGMLGRGEHSEITTF
VGKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDSVGANLIVQVKNGK
VMRVLPFENEEVNECWISDKDRFAYEALDSEQRLTKPMLKQDGKWQEVDWQTALEYVAHG
LRNIRHEHGADAIAALGTPYSTLEELSLLQKIVRGVGSENIDFRLRQSDFGLDGQIKPWL
GMSIVEFSQLNRVFVIGSFLRKDHPLLSARLRQSAKSGAKVSVLHATDDDLLMPVANKII
AAPSAWLSALAEVAVAVAEAKGVAAPSAYAGVTASDAAKATAASLLSGDAKGVFLGNAAV
QHPQAAQLHAAAQWIAEQTGAKLGVLTEGGNAVGGYLANAVPAAGKAAAVFAQPRKAYLL
LNAEPELDSYDPQAASAALKQADMVVVMSAFKHGADYADVLLPIAPFTETSGTFVNTEGR
AQSFNGTVKPAGDARPGWKVLRVLGNLLELENFEYETSESIRDELLGKETDLSARLNNLA
SVQLRAVSTAAAEVERVADVPIYFADPIARRSAPLLETRDGQAPRAWLSAALASKLGVAE
GDQVKVKQGSGSAALTAAIDKKLPENVVRVAAAHASTAALGGMFGAIVVEKA