PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS12755 (1180 amino acids)

SeqID: HSERO_RS12755 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Periplasmic            0.12
    Cytoplasmic            0.04
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS12755
LPTVLASSTDDVPLAPVSLDDKYTATTGAIYLSGIQALVRLPLLQQIRDRAAGLNTAGFI
SGYRGSPLGGLDEALWHAQPHLAAHRVKFQPGVNEDMAATAVWGTQQVKLIGPSDYDGVY
AMWYGKGPGVDRCGDVLKHMNHAGTSAHGGVLLVAGDDHGAYSSTLPHQSDHIFSASMIP
MLYPCNVQEYLDLGLHGWAMSRYSGCVVGFKALADTVESSASVDADPFRVQIRLPSDFVM
PEGGLNARLSTDTLGVQARKQEALMQDYKIYAALAYARANRLNRVMIDSPKARLGIIASG
KSYLDVLEALSELGIDEAFAAEIGLRLFKVSMPWPLEPDGVREFAQGLDEILVVEEKRQM
VEYQLKEQLYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTSKADFSVAQIARVIAARIAR
FHTSDLIKARLAFLDAKDAVLSKAVNTPPRPAYYCSGCPHNSSTRVPEGSFALAGIGCHV
MATAIYPEFNKLTTHMGGEGAPWIGQAPFSKVPHVFANLGDGTYFHSGYLAIRAAVAAKV
NMTYKILYNDAVAMTGGQPVDGTVSVPMIAQQMAAEGVQRIALVSEDPGRYADRSSLPAA
VTVHDRKDMDAVQRELRELPGVTVIIYDQTCAAEKRRRRKKGDYPDPNQRLFINAAVCEG
CGDCGVQSNCTSILPLETDLGRKRVIDQSSCNKDYSCVKGFCPSFVTVTGGKLRKSRTGV
SRQEERDDFGLLPQPVLPACDTPFNILINGIGGTGVITIGALMGMAAHLEGKGASVLDMT
GMSQKNGSVTSHVRIAARRDAIRAQRIATGEADLVLGCDMLTAGAFDAISKMRPGRTRAV
VNLHQQPPGQFARNPDWEFPVEEVKALIVESVGQQADFIDATRLATALMGDSIATNLFML
GYAWQRGELPLTEASLLRAIELNGVAVQANKTAFAWGRRAAVDLARVEQIAVPAQPVLLH
LPQSLDQLIKRRVSLLTDYQDAAYAAQFLEVVEAVRAAEAALGSDKLATAVARNLSRLMA
YKDEYEVARLYTNGQFQKELAQQFEGDFSLSFHLAPPLLARKDGQGHLLKARYGGWVMQA
FKLLARMKGLRGGLLDLFGHTEERRMERELIVQYRQLVLDLLPRLTAANLATAIELAQLP
EQVRGYGHVKLKAVHAMRTRQQQLLAVFAQAGQSRLEEAA