PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS17240 (310 amino acids)

SeqID: HSERO_RS17240 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600580: CdhC, Carnitine dehydrogenase-related gene C[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS17240
MAQPRKVIITCAVTGAIHTPSMSPYLPVTPEQIRDEALAAAEAGAAIVHLHARDPGNGKP
TQDPDAFRKFLPQIKARSNVVINLTTGGAPTMGVEERLQPALQLKPEVASLNMGSMNFGL
YEMLNRFKDFKYDWEQPYLAGSDDRIFRNTFKDIAYILESCSANQTRFEIECYDIGHLYT
AAHFIDRGLIKPPFLIQSVFGLRGGIGNDVEDVMHMKRTADRLFGQDYFWSVLGAGRGQI
PIATMAAAMGGHTRVGLEDSLWDGPGKLARSNADQVRRIRTVIEALSLEVASPEDARAML
KLKGGDQVGF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory