PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS17625 (748 amino acids)

SeqID: HSERO_RS17625 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 1168434: Copper amine oxidase precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS17625
LTTLTAAGLSTALLGPLPAAAHGAAAHMLPLKKTMEDFGATVRWDAYAGLWTIQRNSVTV
RVKPRATTALVNGQSVKLPVPLVMKGGQPYVSDEFINTVFAPSLDKTFQIEAVPHPLNPL
SADEINAALEVLKASGRWQPNYRFTEITLAEPPKEQVWKFALGERGQTIARRADFTLLDG
SKVIEGTVDLGQRNVTRWEPKEGVHGMVLVDDFATVQNAMESSPEYAQALAKRGITDIKK
VVATPLTVGYFGGKDALQEDARLLKVVSYLDVGDGNYWAHPIENLVAVVDLVQKKVIKIE
DNGVIPVPMKPTGYDGSGRALVPPPKPLDISEPEGKNYTITGNTLRWRNWEMHFKLDSRV
GLMFSTVTYNDHGKKRQIMYEGSLGGMIVPYGDPDVGWYFKAYLDSGEYGMGTLTSPIER
GKDAPDNVVLLDATLADTSGKPRTIPRAIGVFERYAGPEFKHQEYGQPNLSVERRELVIR
WISTVGNYDYIFDWVFAENGTIGINAGATGIEAVKGVKSSTMRDASAAEDTRYGTLIDHN
IVGTTHQHIYNFRLDLDVDGQNNSLTEVDPVVLPNTPGGPRSSTMQTVQRTAETEQQAAQ
KFDASTIRLLSNPNKFNKVGNPVSYQLIPYAGGTHPIAKGANFSPDEWLNKRLSFMDRQL
WVTRYDPQQRFPEGKYPNRSHEDTGLGAFVKDNQSIVNQDDVVWLTTGTTHVARAEEWPI
MPTEWVHVLLKPWNFFDETPTLGLNKKK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory