PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS17885 (393 amino acids)

SeqID: HSERO_RS17885 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599916: probable aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS17885
MNLNQLAARLQHIAPFHVMELSKKAAVLEQQGRHLIHMGIGEPDFTAPPAVVEAATRAMT
EGKMQYTSATGLPQLRAAISDHYRSVYGLEIAPERIVVTAGASAALLLACAALVERDSEV
LMPDPSYPCNRHFVAAFEGRAKLIASGPEHRFQLSAQMVREHWGSATRGVLLASPSNPTG
TSILPDELRAIVGEVRQRGGFTIVDEIYQGLSYEGAPFSALSLGDDVVVINSFSKYFNMT
GWRLGWLVLPPALVPQVEKLAQNLLICASSIAQHAAVACFTPQTLALYEERKAEFKRRRD
YIVPALESLGFTVPVMPDGAFYVYADCSALADDADQLSLDMLNEAGVVLVPGLDFGPFTA
RRYIRLSYATSMENLQEAVARLRVFFEKRRKAA