PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS20055 (597 amino acids)

SeqID: HSERO_RS20055 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [9 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 7404442: Ribose import ATP-binding protein rbsA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS20055
MSMNKRIPLYALLVVLALFPLLPTPQFWVIQANYIGLYALVAIGLVLLTGIGGMTSFGQA
AFVGMGAYTTSYLTTVHGVSPWLTLPVGLFITGVSAYVLGRITLRMSGHYLPLATIAWGI
SLYFLFGKVDFLGKYDGISGIPALQLAGLDLAKERHLYYLIWAIVLAAAWVSLNLLDSRA
GRAIRALKGGRSMAEAMGVDTGRYKILIFVFAALLASVSGWLFAHMQRTVNPSPFSLAMG
IEYLFIVVVGGIAHIWGALLGAGVLKLLSDQLQVLLPALLGDGGSYESIVFGLILILLLK
YAGGGLWPWVRALWLRAFPTAPAPLRVAHATAMDKRAAVARGAPLLEVDQINKRFGGLVA
VNDVSFKVKAGEIVGLIGPNGAGKSTTFNLVTGLLHASGGRVGFNGRDIAGLPARAIARL
GIARTFQHVRLLPGMTVLENVALGAHMRSQQGFLKNTVNAMLHLERAEEQALLDEAARAL
HRVGLQHLMHEQAGNLALGQQRILEIARALCCDPLLLLLDEPAAGLRHLEKQALSKVLQE
LRADGMSILLVEHDMEFVMELTDHIVVMEFGAKIAEGTPQEIARHPAVIEAYLGGIE