PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS20635 (561 amino acids)

SeqID: HSERO_RS20635 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS20635
MPTDFFNRHRATLEQAVSALQQRGYWSPYNESPSPRFYGEGAAEAGRAAYEARLERPFLF
TPEQAGGDRWVGAEVSPYGPPLGIRYPAPDLDRLLPSMQRAAASWREAGPQVWAGVALEI
VQRLNARSFEIAHAVQHTTGQAFTMAFQAGGPHAQDRALEAIACAWQQLQLIPAEARWEK
PQGKHAPLVMRKTWRIVPRGIGLVIGCCTFPTWNSYPGLFANLATGNAVIVKPHPGAILP
LAITVQVAREVLAEAGFAPDVVTLAAHDASDTGLARTLALRHEIGLIDFTGSSANGDWLE
ERARQARVLTEKSGINQIIIDSTDNLAGMVQNIALSLALYSGQMCTTPQNIYIPRDGVRT
PQGQLSFVEVSQAIVQAVAHLTTDSAKAVELLGAIQNEAVLQRIELARGKGQVLLESTAL
VHPQFPGARVRTPLVMLARRNEAITEEYFGPISFIVPVDDTATAIALAQRIATDQGALTL
SAYTTDATLRQGLQHAAADAGVALSLNLTGGVLVNQSAAFSDYHGTGANPAANCTLTDAD
FVAARYRVVQTREPVASTTTA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory