PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS21960 (378 amino acids)

SeqID: HSERO_RS21960 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    4.90
    Periplasmic            2.50
    Extracellular          2.50
    OuterMembrane          0.10
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS21960
MSDIQDSEANLPPDRPSTPAQPVSADASGTPAASQTPAPAAAAPAAPAPVAAAAPPAVPP
AQPSPESAPAGQAQQAQQSAHSPYSAVPPPHHAGDAPWAQTWRFLTARLRQLSDKAGRRV
MQRTLKIGVSARIFHPEAGAKGLRSKTLQYLEESIAQWVMSRDVLVFMIPTVNTNGLVHP
SNIRLRDYAKHLDGLVLQGGADVSPQSYAQSATRPEWSGDRVRDMYELELLHEFIEAGKP
VLGICRGCQLINVAFGGTLYQDIATDVPTAIPHVNEQYDSNYHTLHFPQGSSLANLLKAE
NAVVNSIHHQAVRDLGRDLSVEAVSGPDQIVEAIRYRKAPFVMGLQWHPEFHRAGSPELL
DCTPVLDSFLRAARETRF