PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS22730 (446 amino acids)

SeqID: HSERO_RS22730 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15598386: probable binding protein component of ABC sugar transporter[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS22730
MTRTKRPANARTGPARCGLAAVCLCALTLWLGGLPAQAQSPSSPVPPATATGSLQVLHWW
TSASERQAINVVVNQLAKQDIQWRDVAIPGGAGMGAAKVLKSMVLANRAPEVTQLNGVVF
GEWADLGLLLELDNVAVQGNWEKQMFPTVWSLLNNHGHVVAAPLGIHRINSLYYNVAVFK
RYNLSPPKTWDEFDQIVKKLQGSGVVPLAQSAEAWQLATLFENLALAESGPAYYRKLFVE
MSPAAYLDARMLHILKRLRALAGAMAQPVRERPWTEVARSMVSGEAAMLIMGDWAKGELN
AWGMEVDQQFGCAPAPGTGEYHLYSTDTLAMFAGNYAHQPMQETLARLTMSPAVQSEYNR
IKGSIPVLRAADPHMDRCARDSWRTFSKGPMWQAPSLVHRMATDDTTKDAIVAEVQRFFM
DRSISEEQAQKRLATIARTLSRNRND

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory