PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS22735 (420 amino acids)

SeqID: HSERO_RS22735 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Periplasmic                   [matched PS01037: SBP_BACTERIAL_1 Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS22735
LPAFPRRPLLAACALALSLGSLAAAPSQAGTLTIESWRVDDLPLWQEVLIPAFQRSNPGI
TVKFSPTAPTEYDSSLAARMAGGTAGDLVACRPFDVSLSLYNKGHLEKLDGKPGMEFFAP
AAKAAWQTDDGRDTFCMPMASVIHGFFYNTKIFKELNLEPPKTEAEFFKLLDTVKANGKY
APLVMGTAEQWESHQVLFTSIGPNYWKGEEGRKALIAGKAKFTDPQFVAAWNYEAKLGKY
LPKGASAQTYSDSQNMFALGKGAVYPAGSWDIAYFNGKMDFAAFPPPVPKNGDACYISDH
NDIGMGINKKSKNKEDAYKFLAWLGSQEFADLYTNKVTGFFSLSNHLISVKDPIAKQMMG
WRKNCASTIRVNSQILNRGTPSMENEMWNVNAQVLNGKMTPQDAAAKIQSGFAKWYKPQQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory