PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0031 (483 amino acids)

SeqID: N515DRAFT_0031 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595989: propionate catabolic protein PrpD[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0031
MSTHDLRSARRPDPDPPMVDIADYVVDYRIDSAEAYDTARYMLLDSLASAMLAMKFPECV
KHLGPLVPGAVLPGGARVPGTSHELDPAQAAFAIGTQIRWLDFNDTWLAAEWGHPSDNLG
AILALADYLGRKAVREGGRASSLRDVLGWAIKAHEIQGCYALRNSFNRVGQDHVILVRLA
STAVATAMLGGGKEQIVTAVSHSWIDNGALRSYRHAPNTGPRKSWAAGDACRRAVIHAIN
AVDRGVVGYPSALSAATWGYYDVAFEGKAFEFERPFGSYVMENVLFKLSYPAEFHAQTAV
ECAMRLHGQVAGRIAEIDQVVIETQEAGARIIDKTGPLANYADRDHCIQYMVAVPLLFGR
LTADDYGDEVAADPRIDALRERMAVSENPRFTRDYFDPDRRYIGNSVQVFFKDGSHTDKV
SIDYPIGHRRRRAEGIPVLLGKFEAAIRGHLPAHRVKAILQATSDPAGLDSMPVQEFLEL
FTL