PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0145 (453 amino acids)

SeqID: N515DRAFT_0145 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600299: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0145
MSDATRTYSADQLWLADGWSADGAFAVDASGHVAPPEGEAERLGAWVLPGMPNLHSHAFQ
RAMAGLAERKGRSDDSFWTWRETMYAFAAAIGPEELKAIAAQLYVEMLKAGYTQVCEFHY
LHHQPDGTPYAQPEAMSLALIEAARETGITLTLLPVLYMTGGFDGRPLSARQRRFGNDLS
SYVRLLEALRRHEGDGLRIGIALHSLRAVPEEAMRGLLATRIAQDLPVHIHIAEQIGEVQ
DCLATRGARPVEWLLDHAPVDARWTLVHATHLTGHETSRLARSGAVAGLCPTTEANLGDG
LFPLSDYLDAKGVLGIGSDSHISISPVEELRWLEYGQRLSTRHRNIAARREGDSVGETLW
RAALRGGARAAGLPVGELRAAARADLLVLDDESPLLAARDARSLLDSFLFAGNTPLVRHV
MCGGRWVVRDFRHHDEAGIAARYRAVVERLAQA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory