PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0165 (556 amino acids)

SeqID: N515DRAFT_0165 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 123765: Urocanate hydratase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0165
MNAPTRIDTTRTIRAPRGGELSCKSWLTEAPFRMLQNNLDPEVAENPAELVVYGGIGRAA
RNWECFDAILRALRELNDDETLLIQSGKPVGVFPTHADAPRVLLANSNLVPAWANWEHFN
ELDKKGLMMYGQMTAGSWIYIGSQGIVQGTYETFVEMGRQHYAGSLKGKWILTAGLGGMG
GAQPLAASLAGACSLNIECQQSRIDFRLKTRYVDEQATDLDDALARIARYTAAGEAKSIA
LLGNAADVLPELVRRGVKPDAVTDQTSAHDPVNGYLPGGWSVEEWFERRKSDPAGTAKAA
KQSMRTHVEAMLAFQRQGIPTFDYGNNIRQMAKDEGCADAFEFPGFVPAYVRPLFCRGVG
PFRWVALSGDPEDIYKTDAKVKELIPDDPHLHRWLDMARERISFQGLPARICWVGLGLRH
KLGLAFNEMVRKGELKAPVVIGRDHLDSGSVASPNRETEAMQDGSDAVSDWPLLNAMLNV
AGGATWVSLHHGGGVGMGYSQHSGVVIVCDGSEAADQRIARVLWNDPGTGVMRHADAGYD
IAVQCAKEQGLKLPMR