PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0378 (547 amino acids)

SeqID: N515DRAFT_0378 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0378
MNAAALFVKALEAEGVRRIFGVPGEENLDLVEALRDSKIELIVTRHEQAAGFMAATWGRL
TGEAGVALSTLGPGATNLVTAAAYAQLGAMPMLMITGQKPIRTHKQGLFQLVDVVDMMQP
LTKYTRQIVSAPTIPARVREAFRRAEEERPGAVHLELPEDIARDSVDEAILLPTEYARRP
SPDDAALVQAGEAITAAKHPILMIGAAANRQRTAVALRTFIDKLGIPFFTTQMGKGVVDE
DHPLWLGNAALSDGDFVHRAIDAADVIVNVGHDVVEKPPFFMHKGRRTVIHINFSSAEVD
TVYFPQIEVVGDIAHTVERLTDALTPQAHWNFKYFDQVREAFHRQLAEHADDPRFPIHPV
RLVADTRRYMPDDGVLCLDNGMYKIWYARYYRARQPNTVLLDNALATMGAGLPSAMAAKL
VYPERKVLAICGDGGFMMNAQELETAVRLKMDLVILLLRDDAYGMIRWKQAEMGYADFGM
QFSNPDFVKFAEAHGAHGHRPESADAFLPTLKRAFEQGGVHLIDLAIDYSDNHRILNEEI
RRLSAAV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory