PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0416 (686 amino acids)

SeqID: N515DRAFT_0416 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598210: fatty-acid oxidation complex alpha-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0416
MFEGLRFNHWKTSLDDSGIVTLTLDRANSSVNALSREVLDELGQIVERLSIEKPAGVLIH
SAKPGGFAVGADIKEFVEYARDGTVLQNIENGQRVFESLARLPCPTVAAIHGACMGGGTE
LVLACRQRIAADDEKTRIGLPEVMLGIHPGWGGTARLPRLIGALDALPVMLTGKALSARR
AAALGVVDRLAPPNELLAEARALLRRPHARPAARRLKAWATNTWPARQILAPMVLKQTAA
KVRKEHYPAPFALINVWQRGGSSIQQRLKLEARSVAKLAETSTARNLIRIFLLQERLKGQ
GSGVEHGIEHVHVVGAGVMGGDIAAWAAFKGFQVTLQDREMKFIQPALDRARALYEKKLK
TPEKVEETARRLRADVEGKGVAAADLAIEAIFENAEAKQALYASIEPQFQADEILATNTS
SIPLDELRRGLKAPQRFLGLHFFNPVAQMPLVEVVRHDGLDPEVEKRALAFCKAIGKLPV
AVKGTPGFLVNRILMPYLLEAIRLYNEGVPGPVLDKEAKKFGMPMGPIELADTVGLDVCA
SVGKELAPFLGLELPPGIEDKLAAGKRGKKDGQGFYVWQEGKPQKPEVDPDYAVPADLQE
RMLLPMVNEAVACLADGVVDDADLLDAGVIFGTGFAPFRGGPIQYVRSEGAAVIKGKLER
LAQRHGERFTPKQGWDLAILAQPPEA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory