PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0461 (816 amino acids)

SeqID: N515DRAFT_0461 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11140879: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.86
    Periplasmic            0.14
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.86

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0461
METKSRPGVALWITAALFVFLGLGLLAGGAWLLVLGGSPYYVLAGAMLIATGWLAWRGSG
LALGLHALLLLATLLWAIYEVRFDWWQLVPRVAVWFVLGVWLLLPWVSRRLEPDPEPTLR
WATGTLPLWLVLAASVALGAVAYFTDYYTLAGEAPEAGAPPADATGTPPNDWIAYGRSGH
GDRHAPAAQITPANVAKLQVAWTFHTGDFKGPGDPTEIANEVTPLKANGMLYLCTPHDIV
IALDPDTGKERWRYDPKINRDAKGYQHMICRGVAYHDSGAYAAQAATAGVAPAAPPPTPK
GAVAAEAIHFDSCPRRIFAPTADATVVALNADNGQPCTDFGDHGVIGLYQGMAMKRRGFL
NPTSPPTVTRNVLIVSASVTDNESTDEPSGVIRGYDVTTGQLLWNWDAAAPDSTAPLPAG
QHYKRNSPNSWSVSSVDEKLGLVYIPMGNQTPDMWGGERYPEGERFNSAIVALDIATGKL
RWVYQTVHHDLWDMDIGGQPSLVDLDTPQGKVPALVASTKRGDIYVLDRRDGKPVVPAPE
RPVPQGAATGDRTSPTQPFSALSFAPEHPLREADMWGTNPYDQLVCRIKFRRLRYDGIFT
PPSEQGSLVYPGNYGVFDWGGVTVDPQRQLLIGNPNYMAFMSRLITRETEEARSAKGSTG
IEHGLQPMQGTPFAVDLRPLLSPLGIPCQAPPWGYVAAVDLRTMRKLWMHRNGTVVDSAP
LPIPLPLGVPSLGGMITTGGGVAFMSASLDYYLRAYDVRNGKQLWEARLPAGGQATPMSY
VSDQTGRQYVVIMAGGHGSLGTKMGDALIAYALPKP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory