PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0481 (755 amino acids)

SeqID: N515DRAFT_0481 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597444: 2-oxoisovalerate dehydrogenase (beta subunit)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0481
MTALPFSLSARHKGFNRAEIVDQNFIEFVQLWQGHARAAPRDGEAVLPGSALDAQGFRDL
LESQLISRHLDLMARVLRVQNKVFYTIGSSGHEGNAMVARLTRHTDPAFLHYRSGGFMAE
RFRKLPGMDPVMDSALSFAASMEDPASGGRHKVWGSKPLWVLPQTSTIASHLPKAFGTAV
AIEQARRIGHPLPVPQDSIAICSFGDASSNHATAQTAFNAAAWTAYQKLPAPVLFVCEDN
GIGISVKTPSGWIANNFRQRPDLDYFHADGLDLAEGYGQVREAVEHCRRTRRPTFLHLRT
TRVMGHAGTDFEIEWRSVDELFALEATDPLLRSAEIALASGLYTRESLLALYEATRKQCF
AAAEEADRRPRLGTLAEVMKPLAPYTPAAVKAEAERADYAARRAEVFGGEDKLPEKQAPR
HLAIQIGQALHEVMAKYPESLLFGEDVALKGGVYTVTKGLFKTFKGNRVFNTLLDETVIL
GLAQGYANMGMLPMPEIQYLAYFHNACDQIRGEACSLQFFSNDQYRNPLVMRVAALGYQK
GFGGHFHNDNSIAALRDIPGLVVGCPSRGDDAAAMLRTLMALAKVDGRVCAFLEPIALYM
TKDLYEAGDGQWQFAYPAPGEALPLGEGRVYEQDADDLVVFTFGNGVPMALRAAREIEKK
HGWRTRVVDLRWLAPLNDKFIAGQARNARRILVLDEGRRSAGVGEGIITAIVEGGCGATP
LQRVVGADTYTPLAGAALLVLPGEAEIVAAAERML

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory