PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0565 (523 amino acids)

SeqID: N515DRAFT_0565 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595528: threonine dehydratase, biosynthetic[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0565
MNAVAAHRPPTEEADHDLLRRTLAARVYEVARETALESAPLLSARLGQRVLLKREDQQPV
FSFKLRGAYNKMVGLDAAQRARGVIAASAGNHAQGVALAAAKLGLRAVIVMPVTAPQVKI
DAVRRLGGAWVEVVLAGDSYSDAQAEAARLEQQHGYTFVHPFDDPAVIAGQATVGMEILR
QHPGPLHAVFVPVGGGGLLAGVAAYIKALRPEVKVIGVQTVDSDAMAQSLEQGERVTLDE
VGLFADGTAVKRVGAETFALCQRHVDAMLRVDTDAICAAIRDVFQETRSVPEPSGALALA
GLKQYAATHQLDDATLVAIVSGANLNFDRLRFVAERAEVGEQREAVFAVTIPEERGSFRR
FCATLGQRSITEFNYRIGDAASAHIFVGIQIRQRDEREALTAAFAAEGFGVLDLTDDELA
KLHLRHMIGGRSPLAHDELLYRFEFPERPGALTRFLGHMHPDWNISLFHYRNHGADYGRI
LVGIQVPAGERAMFEQFLAQLGYPCRDESGNPAYRLLLREASP