PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0567 (625 amino acids)

SeqID: N515DRAFT_0567 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0567
MNALLPHTYDAVPEDDATHPLNALRMSGAEVVVQVLADEGVDVLFGYSGGAILPVYDAVF
RYNATHIGPSGGEPMPLIVPANEQGAGFMAAGYARASGKVGVAIVTSGPGATNMVTPVRD
SMSDSVPMVVLCGQVPTTAIGSDAFQEAPIANIMSACAKHVFLVTDAEKLEATLRTAFEI
ARSGRPGPVVVDIPKDVQNTLLPFHGEGLLPMPGYRARLQRLEQSTLDDAQCVAFFEALA
QSKRPLIYAGGGTIASGASHELRAFVADYGLPVTTTLMGLGAYDTTEPLALHMLGMHGTA
YANYAVEDCDFLFTLGARFDDRVAGVPDKFAPQAKFIAQIDIDPAEIGKVKSVDWHHTGD
LTRTLAQLRAWGERHGWREQLSARYAPWHRHVAELKQVHALDYDRASPLIQPYAVIEEIN
RHTQGHAVISTGVGQHQMWAAQYFDFREPRHWLSSGSMGTMGFGLPAAIGAQFARPGAVV
IDIDGDASIRMNLGELETVTTYGLPVKVVVLNNIGDGMVRQWQKLFFRGRFASSDKSLHR
KDFIKAAQADGFEWARRLERREELAATIADFLAHPGPAFLEVMIDPDAGVYPMVGPGATY
AQMITGDHIASRQAVQADGAASDMF