PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0570 (365 amino acids)

SeqID: N515DRAFT_0570 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 6648062: 3-isopropylmalate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0570
MKARIVTLPGDGVGPEVTAAAVAVLDAVAAHYDHTFDYEQHLIGGCAIDATGEPLPADAL
AACKSADAVLLGAVGGPKWSDPSAPVRPEQGLLALRAALGVYANLRPLQVHPALTALSPL
KDDKLRNVDVLFVRELTGGAYFGAKTRTVDTATDECKYTVVEVERVVRRAFELARGRRHK
VTSVDKANVLETSRLWRSTVQRIAADYPDVKLEHQLVDSMAMLLLTQPASYDVVVTENLF
GDILTDEAAALAGSLGLLPSASLGEGARGLYEPIHGSAPDIAGKGVANPVGAILSAAMLL
RHSLGLEEEAGAVEAAVEHVLEHGPRSRDIGGDAGTAAIREAVVAALDEHVANSEAFFSG
ARACG