PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0571 (194 amino acids)

SeqID: N515DRAFT_0571 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598316: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices: TMHMM

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0571
MKAVTRIHSRTAVLADENIDTDRIIPARFLTTTERAGLGKLCFNDWRYLPDGSDNPAFPL
NQPQAKGCAILVAGRNFGCGSSREHAPWALLDFGIQAVLCSEIADIFRNNALKNGLLAIV
VSDAEHRWLLDHPGTELSIDVEGQYIALPDGGRIPFQLEPFARHCLLNGVDQLGYLLQHD
DAIAHYEQHLEQAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory