PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0936 (535 amino acids)

SeqID: N515DRAFT_0936 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598084: geranyl-CoA carboxylase, beta-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0936
MSVIASQLDTRSPEFQAGSASLRALVDDLHRQLAHSAEGGGEKAREKHTARGKLLPRERI
RALLDPGSPFLELSPLAAHGMYDDAAPAAGIITGIGRVHGIEVVVVANDATVKGGTYFPM
TVKKHLRAQEVALENRLPCVYLVDSGGAFLPLQDEVFPDKEHFGRIFYNQARMSGLGIPQ
IAVVMGSCTAGGAYVPAMSDETIIVREQGTIFLGGPPLVKAATGEVVDAEALGGADVHTS
VSGVADHFAENDAHALSIARDIVASLNRRKDIPLALRAPAEPRYAAEELYGVIPQDTRRP
FDIREVIARIVDGSEFHEFKARYGKTLVCGFAHIHGYPVGIVANNGILFAESALKGAHFI
ELCNQRNVPLVFLQNITGFMVGRKYENAGIAKDGAKMVTAVACSHVPKFTVVIGGSFGAG
NYAMCGRAYGARFLWMWPNARISVMGGEQASSVLATVRRDGLEASGKSWSAEDEEAFKAP
IREQYERQGHPYYASARLWDDGIIDPADTRRVLGLAISASLNAPIEPQRYGVFRM

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory