PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0938 (394 amino acids)

SeqID: N515DRAFT_0938 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1174677: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0938
MSDVSVVIAGAKRTAIGSFLGQFTGVPTPVLGATAIKAALEQAGIAAQDVNEVLMGCVLP
ANLGQAPARQAALKAGLPAAVGCTTVNKVCGSGMKAIMLGHDLIKAGSAAVVVAGGMESM
TNAPHMVNARTGIRYGDGQLVDHMAWDGLTNPYDGKAMGVFGELCADKYHFTREEQDAFA
IESVKRAQAAQQNGAFAGEIVPVTVAGRKGDVVVDTDEQPGRSDIAKVPSLKPAFRKENG
TITAASSSSISDGAAAVVLLSADDAKARGLQPLARIVAHATHSQEPEWFTTAPVSAIQKV
LDKAGWKVDDVDLFEVNEAFAVVAMAPMRELGIPHAKLNVNGGACALGHPIGASGTRLVV
TLLNALQTRGLKRGVASLCIGGGEATAIAVELLG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory