PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0954 (533 amino acids)

SeqID: N515DRAFT_0954 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0954
MTTQPAPVQPVLIDGDWRAASAPVGQFRAENPTTGEAIGPAFPICGAADVEAALAAATAA
AAELAATPPERIAAFLEAYADAIEADAEALVDIAHAETALPKQPRLAAVELPRTTNQLRL
AAKAVRSYAWTQPVIDTAANLRSHLAPLGKPVLVFGPNNFPFAFNAIAGSDFASAIAARN
PVIAKAHPSHPGTSERLARAAFAALRQAGLPAASVQMLYHFDHAIGGKLAGDARLGAIGF
TGSRAGGLALKAAADAAGIPAYVELSSVNPVFLLPGALAERGIALAQEFFTSCTMGSGQF
CTNPGVVIVPRGEAGDAFVEAAKAHFAAAAPSVLFSGGVLEHLQKGIATLRAAGAQLLAG
GDTGSPGYRHAPTLLEVDATQFLREPQALQTEAFGPASLLVRVDGVAQMVQVATAFEGNL
TGTLYANSADDAAWNDVAQALRPRVGRLIANRMPTGVAVSAAMNHGGPYPSTGHPGFTAV
GMPAAIRRFAALHSYDNVPEHLLPPELRDHNPGGVARQIDGCWCVDDLETKQA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory