PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0973 (1155 amino acids)

SeqID: N515DRAFT_0973 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1723836: LAO/AO transport system kinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0973
MSSPAQHVSASAAVHEGRPLRFVTAASLFDGHDAAINIMRRIIQSQGAEVIHLGHNRSVE
DVVRAALQEDADAIALSSYQGGHVEYFKYMVDMLKEHGAAHIRVFGGGGGTITPEEIREL
QAYGVERIYHPNDGMKLGLTEMIEDVMRRTREAADQRAGAEQATAVAPRVDIDDEISIGH
MLSSIEEGQLPEAELDHLRKQWKMAGKQTPVLGVTGTGGAGKSSVVDELLLRFLHAFPDM
RIAVLAVDPTRRRSGGALLGDRIRMNSLRSHRVYMRSMATRRQHAATSVVLHDCIDFLKA
QPYDLVIVETAGIGQSDSEIVDLVDFPMYVMTSDYGAASQLEKIDMLDFAELVVLNKFDK
RGAEDALRDVRKQWKRNRTAFALKDDEVPVYPTIASQFNDPGVTWMFANLCRLLRDKLTL
PAPKWTPELDTSLKEPRATVLIPGSRVRYLAEIAEQGRGINAGIEREAEFASKAQHYYES
LKDLGDARLPRELARYDSQSLHEEGADRTLLTLRQRYNQAVKELSHEAVHLLHDWPARYK
SVTDEYNEYKVRDKTIRVENYRESLSHQKIPKVSPPRTKDWGDLVRFLMRENLPGYYPYT
GGVYPYRRTGEDPTRMFAGEGTPERTNRRFHYLSQGGAATRLSTAFDSVTLYGEDPAPRP
DIYGKIGNSGVNVATLDDMKKLYSGFDLSAPSSSVSMTINGPAPIILAMFMNTAIDQNIE
KHLKADPARWAEAQQKIAALQSHGGPRYSGELPKGNEGLGLGLLGITGDQLVDAQTYARI
KEETLQIVRGTVQADILKEDQAQNTCIFSTEFALRMMGDIQQYFVDHKVRNFYSVSISGY
HIAEAGANPISQLAFTLSNGFTIVEYYLARGMHIDDFAPNLSFFFSNGMDPEYTVIGRVA
RRIWARAMRERYGASARSQMLKYHIQTSGRSLHAQEIQFNDIRTTLQALYALFDNCNSLH
TNAYDEAITTPTEESVRRAVAIQLIINRELGLNFNENPWQGSFVVDALTDLVEEAVYREF
EAISERGGVLGAMDTMYQRGKIQEESMYYEQKKHDGSLPLIGVNTFLPKDHGGEIATEIE
LIRSTEEEKGQQIDNVQAYAKARNGLAPESLKILQNTARERRNVFEQLMEAVKYNSLGQI
SHALYDVGGEYRRNM