PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_1080 (422 amino acids)

SeqID: N515DRAFT_1080 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121467: Proton/sodium-glutamate symport protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_1080
MKLVSWWLGIRFWKRVLAGFVLGALAGWLCGPGSVAWFQPLGDVYVALIKMIAVPLVFFA
VVNSVSSLHGVQRMAALGGRTFLWFALTAALAVGVGLLVGHLTDPGLGVGQLTMAGDYKV
REVPSAVKVLLDVVPTNPFRALSEGKILQVIFFAGLLGLALVKIGEKSARLRELFGEAND
AMIQVTRFVLEMTPIGTFGLIAALVAGYGFEKLLPLGKFVLALYAACAVQIVVVYGGLLL
AHGLSPRRFFRGVLPAMQVAFTSSSSFASMPVALRSVTQNLGVSPAYASFAVPLGASIKM
DGCGAIYPAISSIFVAQYFGLQLEPAQYFVILLASVLGSFGTAGVPGTATVMVTLVLSSA
GLPVEGIGYLVAIDRVLDMMRTMTNVTGQMLVPVLVAREQGLLDMDVYLGEAAPAGLQEP
AR