PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_1084 (229 amino acids)

SeqID: N515DRAFT_1084 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [5 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 401471: D-methionine transport system permease protein metI]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_1084
MSAPLLQSLFPNIDDWAELGHACIDTLLMLGGSLALTVLIGLPLGVLLYLTGKGQLREMP
KLYAALSLVVNILRSIPFIILMIVLMPLTYVLVGTKLGIRGAIPPLVIGAAPFFARLVET
ALREVQRGVIEASQAMGASTWQIVRHVLLPEARGGLIAGTTVTAIALVGYTAMGGAIGAG
GLGDLAYRYGYLSYKSDYMFVTVVLLIVLVQLLQMVGDRVVARFAGNRQ