PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_1254 (296 amino acids)

SeqID: N515DRAFT_1254 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597407: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_1254
MNPLHASVIDAHQHYWRVQRGDYGWLADAPHVLRRDFLPFELDPHRAAAGVTRAILVQAA
PTEAETRFLFELARADRAVAGVVGWVDFEATDVDARIAALVRDGDGLLLGLRPMAQDIED
PHWLARPELDAAFASLQRHGLAFDALVRPDQLPALLARLEREPQLRAVLDHGGKPAIDGV
AGFDAWAAPIAALAQRSSLQCKFSGLLTQLAPNLPESALAPYVEHLFACFGPSRLLWGSD
WPVLTLRGDYAHWIDLARAYAHRLAPGHEAAIFGGNAAAFYRLAPTSHPHRKEITS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory