PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_1323 (401 amino acids)

SeqID: N515DRAFT_1323 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 3025166: Putative nucleoside transporter yegT]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_1323
MKWRLRLMMLFEYAIWGAWYVTVGTWLGKTLHFSGQEIGAIAGTTAIGAMISPLFVGLLA
DRLFDTRRVLAALHVLGAVLLMFAARQSSFPLLYGTLLAYSLCYMPTLALTTSLAMRHIR
DPQEEFGGIRVLGTIGWIVVGLIVGAWGVEATATPLQLAAGLSVVTALYCLTLPPTPPLA
RNQRFELRHALPLESLHLLRDRSMAVFALASFLICIPLQFYYAFTNLFLNEVGVVNAAGK
MTGGQMSEILCMLLIPWFFRRLGVKYMLAVGMLAWVLRYVLFAFGAPGDLMWMLWLGIVL
HGICFDFFFVVGQIYIDREAPSALRAATQGLITFLTYGLGMFVGSWLSGVVVDTYAGAQN
AHDWRSIWLIAGGCAAAVLVLFVLAFKDRRSAAGQPVAVTD