PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_1366 (232 amino acids)

SeqID: N515DRAFT_1366 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            CytoplasmicMembrane           [matched PS00221: MIP Pattern - Cytoplasmic Membrane]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2506860: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_1366
MSIGKRLTAEFFGTFWLVFGGCGSAVLAAAYPELGIGFAGVALAFGLTVVTMAYAVGHIS
GGHFNPAVTVGLCAGGRFPAKDVVPYIVAQVIGSIAAAAVLYVIASGKAGFDATAGFASN
GYGEHSPNGYSLHAAIVAELVLTAFFLLVIHGSTDKRAPAGFGPLAIGLALTLIHLISIP
VTNTSVNPARSTGVAIFQGTWALQQLWVFWLVPLIGGAVGGLIYRHLLESRD