PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_1419 (916 amino acids)

SeqID: N515DRAFT_1419 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 54294577: aconitate hydratase [Legionella pneumophila str. Lens]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_1419
MLDSFATRDTLKVNGSSYQIASLAKLGQRFDIKHLPYSMKILLENLLRHEDGVNVTAKEI
EAVARWNPKAEPDTEIAFMPARVVLQDFTGVPCVVDLAAMRDAVVKLGGDAKQINPLAPA
ELVIDHSVQVDVYGSESALEQNVAIEFQRNQERYAFLRWGQKAFDNFKVVPPRTGIVHQV
NLEYLGRVVFTGEKDGQSWAYPDTVFGTDSHTTMINGVGVLGWGVGGIEAEAAMLGQPSS
MLIPQVVGFKLTGKLAEGVTATDLVLTVTQMLRKLGVVGKFVEFFGPGLKDLALADRATI
GNMAPEYGATCGIFPVDQEALNYLRLSGRSEEHIELVKAYAQAQGLWHDENTPHAQFTTT
LELDLGDVRPSLAGPKRPQDRVLLQDVEKSFRDALGPLTANRRPRNGDTSNFINEGGSAA
IGNPANAVSESGVLVEKNGESFRLGDGAVVIAAITSCTNTSNPAVMLGAGLLAKKAAAKG
LKAQPWVKTSLGPGSKVVTDYLEKTGLLQELEKVGFYVVGYGCTTCIGNSGPLPAEISKG
IAEGDLAVASVLSGNRNFEGRVHPEVKMNYLASPPLVVAYALAGSLDVDLSKDPLGTGSD
GQPVYLRDIWPSNQEISDTIAGAINPAMFAKNYADVFQGDDRWNHIASPDGSVYQWGDST
YIKNPPYFDGMTREVGKVEDIHGARVLGLFGDSITTDHISPAGSIKKDSPAGRFLIGKGV
EPKDFNSYGSRRGNDDVMVRGTFANIRIRNLMLDGVEGGYTLHVPSGEQLAIYDAAMKYK
AEHTPLVVLAGKEYGTGSSRDWAAKGTLLLGVKAVIAESFERIHRSNLVGMGVLPCQFED
GQSAQTLGLTGKEVFDITGLNDGESKVAKVTATAPDGSRKEFIVKVLLLTPKEREFFRHG
GILQYVLRQLASKKAA