PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_1736 (451 amino acids)

SeqID: N515DRAFT_1736 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597195: DhcA, dehydrocarnitine CoA transferase, subunit A[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_1736
MDKVYASAAQALDGLLFDDMTIAAGGFGLCGIPENLIAALLAAGTKGLTIVGNNAGVDDF
GMGPLLKTRQVKRVYASYVGENKEFERQVLAGELELHLVPQGTLAEKLRAGGAGIPGFYT
RTAFGTKLAEGKETKVFDGKEYVLEEAIHADVSIVKAWKGDRLGNLVFRKTARNFNPMIA
TCGKLCVAEVEELVEVGTLEPDQVHVPGIYVDRIIQGPSYEKRIEFRTVAGANTGKESPL
RTAMAQRAAKELRDGFYVNLGIGIPTLVANFIPAGIDVTLQSENGLLGIGPFPDDAHVDP
DLINAGKQTITTLPGSSFFSSAESFAMIRGGHIDLSILGGLEVSCTGDLANWMVPGKMVK
GPGGAMDLVSGVKRVVVLMEHTAKDGSPKIKNQCDLPLTGQQVVDLIITDLCVFEVEKGK
GLTLIELQEGVTVEEVKAKTGCDFAVASTLG