PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_2198 (280 amino acids)

SeqID: N515DRAFT_2198 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1708001: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_2198
MGEAATSGWPGRDAGSKLAGMNNRIDAWQLQGHTALITGASKGIGYAVARELAGLGANLL
LVARDDDHLEQVRVELADDFDHIEVLAFAADLSMQEDRLAVFDWIADLGAPLSLLVNNAG
GNTPAAVLEYSERDYRAIFELNLFSAFEMCRLAHPQLVQHANAAIVNVGSVSGITHVRTG
AAYGMSKAALHQLTRNLAAEWATDGIRVNAVAPWYIRTQRSEPALADDEYLDEVLDHTPL
RRIGEPEEVAAAIAFLCLPAASYITGQVLAVDGGFLNYGF