PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_2296 (756 amino acids)

SeqID: N515DRAFT_2296 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_2296
MNVRFDQPLGESQPDNPSRREALKLGGLVVAFLWLGGGAKVLGRAAAQGPVAAGDAAFAP
NAFIRVGTDGAVHLVMPSIEMGQGAYSGQATLLAEEMDLGLDQVVVEHAPANRKLYANPL
LGEQATGGSTTIRFCWTTLRQAGAAARALLVGAAAAKWKVDPAQCTVARGVIRHEASGRS
LGYGEVANAAAQLPVPDKVQEKDAAQFALIGKPLRRVDTAGKVDGSLQFGIDLRVPDMKV
ATVKACPTFGGKLVAVDDSRARQVPGFVAVLKIDNAVAAVGEHFWAAKQALDALDITWDH
GPNAQYSTEQLFKDLAEASKHGTPIPGKAVGNVDGVKGKALEATYQLPLLAHATMEPQNA
IVHVRPDGCDIWTGTQVPARCVDVAAKLTGLKPESIVVHNQYMGGGFGRRLFEDPVEQAV
AFARQVSYPLKMVWTREEDIAHDRYRPAYYDRIAATLGDDGKPVAWTHRIASGSVLATFA
PGAMGKNGMDSDAIECAADVPYEFPNMKVEWVRHDMPEGVHLGWWRGVGPVHNVFVVESF
MDELAHAAGKDPLVYRREQLQKNPRALGVLNLAAEKAGWGKGSLPARVGRGVAVAAPFGS
YLCVIVEAEVSPQGEVKLRRAVAAVDCGIAVNPNTVAAQVQGGLIFGWTAALYNGITIKH
GAVEQHNFNDYRMMRINETPALEVHLVDSKEAPGGIGETGTVMAFPALFNALFAATGVRL
RSYPIDRAALVQGPDALKAVITQATDRAAAAKEGMA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory