PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_2307 (331 amino acids)

SeqID: N515DRAFT_2307 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118129: Sulfate/thiosulfate import ATP-binding protein cysA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_2307
MRIDYRIEHPVALHASFEVAGFTVLLGASGEGKTLLLSAIAGLIAARGEPFDGLPPQQRA
VGYLPQGHALFPHLRAWENVAFSLRGARRREQAMQWLERVGMAGLAERWPASLSGGQQQR
VALARALARRPSLLLLDEPTSALDPVTRDEVLAELIAEVHQAGIPALAVSHDPALAAVAD
RLVLMHGRRIVQIGTPEAVHAQPASGAVARLLGLRNVQRGRIVGAPGAQRLSWPEADASL
RVETALPDGTAVDWHVPPAAVRLHDPAAAPGDAIAASFELRQTSPHRNYLGMRCGKARLW
VEPPAGYELPAAPMLSLPPDAIRCWPVEEHA