PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_2409 (574 amino acids)

SeqID: N515DRAFT_2409 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595550: dihydroxy-acid dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_2409
MGSPKKPLRRSQEWFGREGKQGFYYRSWLKGLGLPNDMFDGRPVIGICNTWSELTPCNSS
FRELAEHVKRGVYEAGGFPLEFPVMSLGETQMRPTAMLFRNLASMDVEESIRANPIDGVV
LLMGCDKTTPALMMGAASVNLPTIGLSGGPSLSGNWRGQPIGSGTGVIRMSEMVRAGELA
QEEFVEAEACMQRSKGSCMTMGTASTMASMVEALGLSLPENAAIPAVDSRRFRLAHLSGR
RIVEMVHEDLRMSKILTRAAFENAIRANAAIGGSTNAVIHLLALAGRLGVELALDDWDRL
GSHLPCLVNLKPSGDYLMEDFYYAGGLPAVLREIAPHLHLGALTANGRTLGDNIATAPCW
NRDVIRPIEEPLKREAGIAVLRGNLAPDGAVIKPSAASAHLLQHRGRAVVFENIDDFKAR
IDDEALDIDETCVMVLKNCGPRGYPGMAEVGNMPLPPKLLRRGITDIVRISDARMSGTAY
GTVVLHASPEAAAGGNLALVRDGDFIELDVPGRRLHLDLADDELARRRAAWKAPPPPERG
WAKLYVDHVQQAHLGADLDILVGGSGSDVAGDSH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory