PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_2941 (629 amino acids)

SeqID: N515DRAFT_2941 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600291: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_2941
MSVEQIRLDGSSLTRAQLVAAARQRVPVALDEAQLARVQRAADFLADKVSCGEPTYGVTT
GFGSNADKLLGAHRLRDELPGGHPEKPEGTLLEELQHNLITTHAVCVGKPFAEDVVRAML
VIRINTLMRGHSGIRVATLRALAALLNSGVVPVVPEKGSVGASGDLAPLSHLAIVLLGGG
EAFYQGERLPGAEALERVGLAPIRLSFKEGLALNNGTAQMLATAALALDTLEYLLDTADL
AAAMTLDAFAGRSGALRPEVHALRPHPGQVETAGHVRDLLTESTLVDIPYHLVPRFKQWA
ADAWTAPEDQALSFDIGWDWVPANQRHGREAFYSRFLPFKGGKKHQPQDAYCLRCMPQVH
GAVRDAWAQACRVIDIELNAVTDNPLIFPDAEGAQFIEEQVISAGHFHGMPLALAMSYVK
AAIPVLASISERRLNKLVDPATNDGLPAFLTGNEDGTDSGFMIVQYTAAALVNDLATRAH
PASVYSVPTSANAEDHVSMGANEARHVLEMLDDLSHVIALELYTAAQALDFRQAMLNAAR
RLAARGDWKALAAKVSNAPREDHAHYAQFAAEVQQLTLALAEVGDFHAGEAVRKAHDVLR
GHIGFMSRDRAMDGDVRTVCELVQRRAVG