PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_3019 (737 amino acids)

SeqID: N515DRAFT_3019 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141276: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            9.44
    Cytoplasmic            0.33
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
  Final Prediction:
    Periplasmic            9.44

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_3019
MNYKIEGMLRSAVKLGLAAWMCTAIGQVPSARPWSDPKLSPDLRADQLLAQLTQDEKFHL
IRSYFAGPRKPEDKPVPPGYIGSAGYIPALERVGIPAIQESDAGLGVASSERMRPGDYAT
PLPAGPVTAATWDPKVAFRGGAMIGGEAHAKGFNVLLAGGTNLMREPRNGRNFEYAGEDP
LLAGTMVGEAIRGIESQHVVSTIKHFALNDQETARTTVDVRIGEQAMRESDLLAFELAIE
RGKPGSVMCSYNKLNGDWACENDYLLNQVLKRDWKYPGFVMSDWGGVHSAAKAVNAGLDQ
ESAAEIFDKDIYFDKPLRDALAKGEVKQARIDDMVRRILRSFFAAGVFEHPAKKAPIDEK
ANLAVARETLEAGAVLLRNDNQLLPLDVARLESIAVIGAHADKGVLAGGGSSLVTAKGGN
AVPGLKPSDWPGPVMYHPYSPLKALQSMAPKAKVQFTGGDDVAAAAALAAKSQVAVVFVQ
KWAGEDFDARDLSLPDGQDALVTAVAKANPRTIVVLENGSPVAMPWLEQVGAVLEVWYPG
GDAGNGIANLLSGKVNPSGRLPLSWPRDVLQLPRPELPGAGGSGALPQSVDYAIEGANVG
YRWYQSKDLQPLFPFGYGLSYTSFEHGALKVDTKDGKVTATVTVRNTGKRAGADVAQVYV
QVPGAKARRLAGFSKVFLKPGEQRELSIPLERKLLADFDTARHGWVVRGGEYVVSEGRSS
ADLGRPAAVQLSAGVLP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory