PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_3024 (469 amino acids)

SeqID: N515DRAFT_3024 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 56405316: Glutamine synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_3024
MPAQKVLDLIQEHDVEFVDLRFADMLGKHHHVTFPAHTIDESTFEDGKMFDGSSIAGWKG
INESDMILLPDPDTAYLDPFSGHTQLVLHCDVLEPSTMQAYGRDPRSIAKRGEAFLKSTG
IADTAFFGPEPEFFIFDSVRWQNDMGRVFYEIGSEEASWSSRYKYEDNNTGHRPGVKGGY
FPVSPVDSLGDLRADMCKVLESLGQVVEVHHHEVANAGQCEIGVKFNTLVQKADELMTMK
YVIKNVAHQNGKTATFMPKPIVGDNGSGMHVHQSLAKDGKNLFAGDLYGGLSQTALWYIG
GIFKHAKAINAFANSTTNSYKRLVPGFEAPVMLAYSARNRSASCRIPYVSNPKGRRIEVR
FPDPMNSGYLVFTALMMAGLDGIINKIDPGAPADKDLYDLPPEEEKNIPQVCSSLDQALE
ALDKDRDFLKAGGVFTDDFIDAYIALKMQEVTRYRASTHPLEFQMYYAL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory