PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_3073 (551 amino acids)

SeqID: N515DRAFT_3073 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 17865747: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_3073
MATTAMGAANIGTGHRRVILASSLGTVFEWYDFYLYGSLAVLIGKHFFSGLNETSAFIFA
LLAFAAGFAVRPFGAIVFGRLGDLVGRKYTFLITIIIMGLSTFLVGVLPSYSTVGMIAPV
LLIVLRLLQGLALGGEYGGAATYVAEHAPDGKRGLYTSFIQITATFGLFLSLLVILGTRM
ALGDKVFEDWGWRIPFLISSVLVAVSVYIRLQLQESPVFQQMKAEGKHSKAPLTEAFGHW
KNLKVVILALLGATAGQAVVWYTGQFYALYFLTQSLKIDGTTANLLIAAALIIGTPFFVF
FGWLSDRIGRKSIVLAGCLLAALTYFPIFKGLTHFGNPAIETAAASAPVTVIADPNACSF
QFDPVGKSKFTSSCDVAKTVLAKKGIPYRNEAAPAGAVAQVTIGTGTIESFEGGGLDSAT
FAAQSKAFGTKIGDALKAAGYPEKADPAQRNDVMLVILLAILVLYVTMVYGPIAAWLVEM
FPTRIRYTSMSLPYHIGNGWFGGFVPTIGFMLVAWKGDIYYGLWYPIIVAVGTFFIGLLF
LKETKDVNITT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory