PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_3215 (284 amino acids)

SeqID: N515DRAFT_3215 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1168952: Citrate lyase beta chain]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_3215
MRSKLFVPGGRPELFAKALAGEADALSFDLEDSVTPELKGAARTAIASFLATEAARQSPK
LMIVRTNAPSTPYFADDIEAVVGDGVTLINLPKIESAEEVRAAVDMIARVEATRGWQRRT
RLLVNIETPLALARAASIAGAHPRVAGLQLGLADMFEPYGIERRDLANVHSVLFAMRMAA
AQADVFALDGAFADVADSEGYREEAALARRLGYLGKSCIHPRQVALANQAFAVSDAEIES
ARRIVEAAREPGNQGRGAFMVDGKMVDLPFLKRAQALLAAAHKP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory