PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_3220 (309 amino acids)

SeqID: N515DRAFT_3220 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 132127: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_3220
MKRGVLVAGSANLDFVVRAAHVPAPGETVLGRGFATFPGGKGANQAVACARAGGAPTRML
LALGDDAHAAPIEASLRAAGVGLDAVRMRGESSGVAFVCLADDGENAITVAPGANAALRP
DHLPPLAGVSHLLLQLETPLPTVKAWARVACRAGIHVALNAAPAQALPRSLLDDCQLLIV
NEGELAAITGEHDITAGLDALDVAAVVVTLGARGCCARVGSQYLLQPGFAVDAIDTTGAG
DTFCGVLVAGLSLGLAYPAALRRASAASALACTRLGAQAGVPGYEQVQRLLAVRPADATE
ALAAYVGFA