PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_3226 (532 amino acids)

SeqID: N515DRAFT_3226 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_3226
MRRMMRYLAGAWLCLALASPALAEDMPRLVAEHGRHALLVDGKPFLILGAQVNNSSNWPA
MLDEVWPAIGQLHANTVQVPIAWEQIEPKEGQFDFSFLDTLVEQAREHRVRLVLLWFATW
KNNGPSYAPSWVKLDDRRFPRLMNREGRRLNSLSPLASATLEADRKAFVQLMTHLRKIDG
ERHTVIMVQVENESGTYGTDRDHSPMADKVFAGSVPEALLRATGKPAGNWSQVFGNDAAE
FFHAWHVAHFIEQVTAAGKAVYPLPMYANAALRDPFNPGPPGAYESGGPTDNVLHVWKAA
APSLDVLAPDIYKPDYKHYSTYLERYARKDNPLFVAETGNDKVYARYVYAAVGAGAIGWS
PFGMDFTGYSNYPLGARKVDDDTLAMFAANYRVLAPMAGELAAAAYAGKLWGAAEPDDTH
EATLDLGEWQAHLGFGQLQFGTEPPKGNPDHAGGALIAQLAPNEYLVVARDVRVSFSPAH
GRKPDFLLDRVEEGHYDHGRWVFRRLWNGDQTDWGLNFIGEPRVLRVRLATY

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory