PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_3227 (956 amino acids)

SeqID: N515DRAFT_3227 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            OuterMembrane                 [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    OuterMembrane          9.49
    Extracellular          0.38
    Periplasmic            0.09
    Cytoplasmic            0.03
    CytoplasmicMembrane    0.01
  Final Prediction:
    OuterMembrane          9.49

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_3227
MRMSPIANRKWMPWCALALAVLAGCGKAPEQADAAKPAAGHAEKLADGVIVHLDQGTQQV
RLQAVDERIVHVTAVPDGKFELPGSLMAVKTGGATHFTVDETPDAVTLKTERLSARVSLR
DGAVRFLDASGKPLLAERADGRTFQPETVEGKPYYAVRQRFESPADEAFYGLGQHQNRQM
NYKGEDVELAQHNMDVGIPFVVSSRNYGLLWDNNSITRFGDAREYQPLSQSLKLYDVDGK
PGGLTASYYDAGGTLKLKRVEKQPDYQYLKDLTQWPAESPAKTTGKVVWEGSIEPAVSGV
HKLRLYASSYAKVWLDGKLVYDDWRQNWNPWYHNLRLPMDAGSQHKLRIEWLPNEGYLTL
LHLDPLSGDEQNELSLFSEVGHAVDYYFVAGDNLDQVIAGYREITGKATLLPRWAYGFWQ
SRERYKTQAEILDTAKRYRELGLPLDNVVEDWSYWPEDAWGSHDFDKSRFPDAKGLVDQL
HAMHVQLMISVWPKFYPTTKNYQELDAKGYIYRRNVEKGEVDWIGKGYLNAFYDPYAEEA
RHIYWRQIQEKLGAVGIDAWWLDASEPDTHSNLDIAERKLRMGPTALGPGGAFFNSYPLM
HTTGVYDGWRRDHGDRRAFILTRSAFAGQQRNAAATWSGDVASRWSNLHDQISAGLNFSL
AGIPNWTTDIGGFALEPRYEKPGAADLDEWRELNLRWFQFGAFSPLFRSHGQFPYREIYN
LASPGSPVYEALAYYDRLRYRLMPYIYTLAGDTYWKDGTIMRGLAMDFPGDAKVRGIDDE
YMFGPAFLVAPVTEYKATSRPVYLPAGAGWYEFHTGKYHEGGAAIQADAPLARMPLFVRA
GAIVPTGPDIQYTGEKPDAPVTLLVYAGADGQFSLYEDEGTTYGYEKGRYSRIALSYDDK
AKTLTIGKREGDGSGAPAKRQFVVRVIRADKANADGVDAGGDKSVEYDGTTQTVKL