PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_3772 (380 amino acids)

SeqID: N515DRAFT_3772 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 67470905: Glutamate 5-kinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_3772
MAEHLPAQPLPNWRRAVLKVGSNLLAADGGGLTPRHARALAAFIGDSHAQGRQVVLVSSG
AVAAGRALLRERALPGDDLAARQALAALGQAPMIALWQSLSPRPVAQVLLTHDDLRHRRR
YLNARATLRELLLLDVLPVVNENDTVAVDELKLGDNDNLAAIVAALVDADLLLIASDIDA
LYDADPRRVPSAVPVPHVSTLTAEVMAMAGGSGSAVGTGGMHTKLEAAVKAGAAGVPTVL
FDGRNTETVAALAAGQLHGTLFDAPRSRMQARKYWLRHAPAAPGSILVDDGAARALAGGR
ASLLPGGIVGADGEFHRGDMVEIVDVTRRPVARGLSQYGAAEVRRLAGRHSSAIDAVLGY
SYGAEIVHRDDLVVLAEVHS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory