PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_3907 (499 amino acids)

SeqID: N515DRAFT_3907 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16077994: glycerol kinase [Bacillus subtilis subsp. subtilis str. 168]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_3907
MDKTYILAIDQGTTSSRAILFDHDGHIVGTAQREFPQVFPQPGWVEHNPREIMTSVLVTM
TEAINQAGVDPARIAGIGITNQRETAVVWDRETGQPIHNAIVWQSRQTSEICTRLQQEGY
DELVRGKTGLLIDAYFSGTKVRWILDHVDGAQARAERGELLFGTIDTWLIWNLTGGKVHV
TDYTNASRTLIYDIYKQQWDDELLKMLDIPRAMLPEVKSSSEIYGQTLPKHFFGREVPIA
GIAGDQQAALFGQACFEPGLAKNTYGTGCFMLMNTGEKAVPSKNGLLTTIAWGIDGKVEY
ALEGSIFVAGSVIQWLRDGLRMLGKASDSQDYAERARDSDGVYFVPAFVGLGAPYWRSDV
RGAVFGLSRGTTKEQFIRAALESMAYQTRDVLEAMQNDAGIELKELRADGGAIANDFMAQ
FQADILDVTLLRPKVQETTAQGAAYLAGLAVGFWQSREEIARRWAVDREFKPSMAQEKRE
KLYGGWKKAVRATMEFTPD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory