PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_3909 (499 amino acids)

SeqID: N515DRAFT_3909 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 12230912: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_3909
MTEQVDVLVVGGGINGTGIARDAVGRGLSVWLCEQDDLASHTSSASTKLIHGGLRYLEQF
EFALVGKALAEREILLRVAPHIIWPLRFVLPHQSHLRPAWMIRLGLFLYDHLQRGRRSLP
GSRRVRLSRHAVGQPLRDEFPIGFVYSDAWVQDARLVVLNAMDAVQRGARVMTHTRCVSA
RRSGERWLARLQSSNGQVTEVAARALVNATGPWAVDFLDEVAAEGHDHGLRLVKGSHIVV
PRLYDHRYAYIFQQPDRRIVFAIPYEREFTLIGTTDVEYRGDPAHPRIDTQETAYLCDAV
NRYFKRGIVPADVVWSYSGVRPLLDDDSGKASEVTRDYLLELEQARGAPLLNVFGGKLTT
FRKLAEEAVDRLAPLLGNREPAWTGKGHPLPGGDIQDPGRLAEQLRATRPWLGEAMAWRL
AHTYGSQSVRVLGDAASLTGLGEHFGADLYASEVDYLRRYEWAGSAEDVLWRRTKLGLHI
GGEGAARLAAYFAKAAGAD