PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_4337 (533 amino acids)

SeqID: N515DRAFT_4337 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_4337
MDYDYVIVGGGSAGCVLANRLSAQPGKRVLLLEAGPRDLNPLIHMPAGIAKLVGDHRGLA
RLYGSGRINWGYRTEPQAQLMNRRLWWPRGKTLGGSSSINAMCYIRGAAGDYEAWAQATG
DERWRWDAVLSWFLRGEDNARGAGPWHGAGGPLSVADLRFHSELSDAFVAAGAAAGFARN
DDFNGARQDGFGLYQVTQRDGARCSAAVAYLRPALQRANLEVRTGALVQRVLIEQGRAVG
VQVGGRRIEAGEVILAAGAVNTPQLLMLSGIGPADHLREHGVPVLLDQPHVGAHLQDHLD
ICSVVGTHSRATFDHLNDLAVAWRYARHRDGIGTSNAAEAGGFVRSRHAPDERCDIQFHF
IPAQLDDHGAHALPGRGYTVHACYLHPRSRGRLRLRSADPAVPIAIHANYLGDAQGHDLK
LMIEAARLSREILAQAPFDAFRGAPVQPAGELRTDTEYADFIRRRAETIYHPVGTCRMGR
EHEAVVDSELRVWGLPGLRVADASVMPTLVTGNTNAPTLMIAERAAALMLGDA